PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.136670.1
Common NameCsa_6G011660, LOC101216638
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-X1
Protein Properties Length: 801aa    MW: 89006.2 Da    PI: 8.229
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.136670.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X127.28.2e-09236254119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+HkC ++CHeG CppC+
  Cucsa.136670.1 236 CGRHKCAEICHEGSCPPCR 254
                     ******************7 PP

2zf-NF-X117.31e-05396415120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CG+H C + C+ G+CppC++
  Cucsa.136670.1 396 CGRHACRRRCCDGDCPPCSE 415
                     ******************85 PP

3zf-NF-X1171.3e-05417441119
        zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                     CG      +HkC ++CH+GpC pCp
  Cucsa.136670.1 417 CGrrlrckNHKCPSPCHRGPCAPCP 441
                     777777779***************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359071137IPR019786Zinc finger, PHD-type, conserved site
CDDcd060082.61E-6172220No hitNo description
SMARTSM004380.072184202IPR000967Zinc finger, NF-X1-type
PfamPF014220.064184201IPR000967Zinc finger, NF-X1-type
CDDcd060083.74E-9226274No hitNo description
SMARTSM004383.8E-5236255IPR000967Zinc finger, NF-X1-type
PfamPF014222.2E-6236254IPR000967Zinc finger, NF-X1-type
CDDcd060087.73E-8279326No hitNo description
SMARTSM004380.0033289308IPR000967Zinc finger, NF-X1-type
PfamPF014220.015289307IPR000967Zinc finger, NF-X1-type
CDDcd060083.74E-9333382No hitNo description
SMARTSM004380.22343363IPR000967Zinc finger, NF-X1-type
PfamPF014220.0049343362IPR000967Zinc finger, NF-X1-type
CDDcd060086.58E-8386434No hitNo description
SMARTSM004380.013396415IPR000967Zinc finger, NF-X1-type
PfamPF014227.7E-4396414IPR000967Zinc finger, NF-X1-type
CDDcd060081.53E-10413461No hitNo description
PfamPF014220.0025417441IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0069423442IPR000967Zinc finger, NF-X1-type
SMARTSM0043848480501IPR000967Zinc finger, NF-X1-type
PfamPF014224.3490500IPR000967Zinc finger, NF-X1-type
SMARTSM0043873509554IPR000967Zinc finger, NF-X1-type
PfamPF0142220509518IPR000967Zinc finger, NF-X1-type
SMARTSM0043816591621IPR000967Zinc finger, NF-X1-type
PfamPF0142211591601IPR000967Zinc finger, NF-X1-type
SMARTSM004380.021634652IPR000967Zinc finger, NF-X1-type
PfamPF014220.13636651IPR000967Zinc finger, NF-X1-type
SMARTSM004385.9697718IPR000967Zinc finger, NF-X1-type
PfamPF014221.3699711IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MISTHDHRRT TSDSDSNSDD DNGGSESLRH LDLSDSIFKA YFEFTGRSTT TADLSKIQSF  60
LTSSSSGALS CLICLERIRL SDPTWSCSSL CFAVFHLFCI QSWARQASDL AAARAATRSL  120
ISPDKPDEHS VWNCPKCRVE YSKSSIPKRY FCFCGKLENP PSDDPWILPH SCGEVCGRPL  180
KHNCGHHCLL LCHPGPCPSC PKIVQASCYC GSVRDARRCG FKNFSCNNVC SKVLDCGRHK  240
CAEICHEGSC PPCRIQGVFK CQCGKTEEKR ECWDRSFRCE DECNKLLGCG KHSCNKGCHS  300
GECGQCPFKG KRTCPCGKKA YEGMPCDVAV PLCGATCDKM LACGLHRCPE RCHRGPCIGT  360
CRIVVFKSCR CGSLRKEIPC YQDLACERKC NRMRDCGRHA CRRRCCDGDC PPCSEICGRR  420
LRCKNHKCPS PCHRGPCAPC PVMVTISCAC GETHFEVPCG TEMDQKPPKC PKRCPVSPLC  480
NHRLSQKPHK CHYGACPPCR RICEEEYSCG HKCQLRCHGP KPPPKPEFTL KPKKKKGFHP  540
EEPAPGSLCP PCPELVWRPC IGQHIGADRM MVCSNSTQFS CDNLCGNPLP CTNHYCTKTC  600
HALKSQHPSP SLRDLSEPCE KCNLPCEKER KPKCAHPCPL KCHPGDCPPC KVLLKRSCHC  660
GSMVHVFECM YYISLSLEEQ ITIRSCSGPC HRKLPYCTHL CPETCHPGDC PSPENCSKKV  720
TVRCGCQTLK KEWLCKDVQA AYRKAERDPK DIPKTQFGYG LLPCGSDCKS KLQAVESELT  780
QRKPEVNGVM SFIPVQKFCI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138563.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0A0K7R10.0A0A0A0K7R1_CUCSA; Uncharacterized protein
STRINGGLYMA18G03080.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]